SubtiBank SubtiBank
ypbG [2018-12-07 16:48:11]
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ypbG [2018-12-07 16:48:11]

unknown
locus
BSU22980
pI
6.61
mw
28.41 kDa
protein length
259 aa Sequence Blast
gene length
777 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]

    • Gene

    Coordinates
    2,404,249 → 2,405,028

    The protein

    Structure

  • [PDB|2WDC] (from Thermus thermophilus, corresponds to aa 122 ... 228 of YpbG, 27% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|0AF09652E1D13C82A4F296EA99132491FF55F45D|ypbG]
    description
    [Pubmed|17434969]

    sigma factors

  • [protein|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM]: sigma factor, [Pubmed|17434969], in [regulon|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM regulon]
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    Biological materials

    Mutant

  • MGNA-A396 (ypbG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/396 NBRP B. subtilis, Japan]
  • BKE22980 (Δ[gene|0AF09652E1D13C82A4F296EA99132491FF55F45D|ypbG]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE22980 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAAAAACTCTCCATTCT, downstream forward: _UP4_TAACTTCTAAAAAGCAAAAA
  • BKK22980 (Δ[gene|0AF09652E1D13C82A4F296EA99132491FF55F45D|ypbG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK22980 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAAAAACTCTCCATTCT, downstream forward: _UP4_TAACTTCTAAAAAGCAAAAA

    • References

  • 17434969,17434969